4 packages found

petab

Parameter estimation tabular data
  1. combine-archive
  2. hacktoberfest
  3. parameter-estimation
  4. petab
  5. python
  6. sbml
  7. systems-biology
22 Contributors
0.5.0published 5 months agoMIT

cobra

COBRApy is a package for constraint-based modeling of metabolic networks.
  1. metabolism
  2. biology
  3. constraint-based
  4. linear
  5. programming
  6. mixed-integer
  7. optimization
  8. flux-balance
  9. analysis
  10. reconstruction
  11. biochemistry
  12. bioinformatics
  13. cell-design
  14. cobra
  15. computational-biology
  16. flux
  17. metabolic-models
  18. metabolic-network
  19. modeling
  20. python
  21. sbml
  22. sbml-model
  23. sbml-simulation
  24. strain-engineering
  25. systems-biology
56 Contributors
0.29.1published 7 months agoMulanPSL-2.0, CNRI-Python-GPL-Compatible

indra

Integrated Network and Dynamical Reasoning Assembler
  1. systems
  2. biology
  3. model
  4. pathway
  5. assembler
  6. nlp
  7. mechanism
  8. biochemistry
  9. network
  10. big
  11. bigmech
  12. world
  13. modelers
  14. communicating
  15. with
  16. computers
  17. cwc
  18. automated
  19. scientific
  20. discovery
  21. framework
  22. asdf
  23. automating
  24. knowledge
  25. extraction
  26. aske
  27. panacea
  28. bioinformatics
  29. computational-biology
  30. indra
  31. modeling
  32. pysb
  33. sbml
  34. systems-biology
21 Contributors
1.23.0published 9 months agoBSD-3-Clause

pybel

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)
  1. Biological
  2. Expression
  3. Language
  4. BEL
  5. Domain
  6. Specific
  7. DSL
  8. Systems
  9. Biology
  10. Networks
  11. bioinformatics
  12. biological-expression-language
  13. bioregistry
  14. domain-specific-language
  15. networks-biology
  16. pybel
  17. systems-biology
11 Contributors
0.15.5published 3 years agoMIT
Showing 1 to 4 of 4 results