8 packages found

grandiso

Performant subgraph isomorphism
  1. algorithm
  2. aplbrain
  3. bossdb
  4. connectomics
  5. dotmotif
  6. grand-graphs
  7. grand-iso
  8. graphs
  9. network
  10. network-analysis
  11. network-biology
  12. subgraph-isomorphism
  13. ullman
  14. vf2
6 Contributors
2.2.0published 1 year agoMIT

caveclient

A client for interacting with the Connectome Annotation Versioning Engine
  1. connectomics
11 Contributors
7.7.1published 1 week agoMIT

dipy

Diffusion MRI Imaging in Python
  1. dipy
  2. diffusionimaging
  3. dti
  4. tracking
  5. tractography
  6. diffusionmri
  7. mri
  8. tractometry
  9. connectomics
  10. brain
  11. dipymri
  12. microstructure
  13. deeplearning
  14. registration
  15. segmentations
  16. simulation
  17. medical
  18. imaging
  19. machinelearning
  20. signalprocessing
  21. bundles
  22. contextual-enhancement
  23. denoising
  24. diffusion-mri
  25. dki
  26. machine-learning
  27. medical-imaging
  28. neuroanatomy
  29. neuroimaging
  30. patch2self
  31. python
  32. segmentation
  33. self-supervised-learning
  34. spherical-harmonics
153 Contributors
1.11.0published 1 month agoOther

cloud-volume

A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
  1. neuroglancer
  2. volumetric-data
  3. numpy
  4. connectomics
  5. microscopy
  6. image-processing
  7. biomedical-image-processing
  8. s3
  9. gcs
  10. mesh
  11. meshes
  12. skeleton
  13. skeletons
  14. big-data
  15. chunked-image
  16. cloud
  17. electron-microscopy
  18. large-image
  19. matrix
  20. microscopy-images
  21. python
  22. serverless
  23. tensor
22 Contributors
12.2.0published 2 weeks agoOSET-PL-2.1

connected-components-3d

Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6).
  1. connected-components
  2. CCL
  3. volumetric-data
  4. numpy
  5. connectomics
  6. image-processing
  7. biomedical-image-processing
  8. decision-tree
  9. union-find
  10. sauf
  11. 2d
  12. 3d
  13. 3d-images
  14. algorithm
  15. cclabel
  16. cpp
  17. cython
  18. labeling-algorithms
  19. neighborhood
  20. path-compression
  21. periodic-boundary
  22. python
  23. surface-area
4 Contributors
3.23.0published 2 months agoLGPL-3.0, GPL-3.0+

edt

Multi-Label Anisotropic Euclidean Distance Transform 3D
  1. 1d
  2. 2d
  3. 3d
  4. algorithm
  5. anisotropic
  6. anisotropy
  7. biomedical-image-processing
  8. connectomics
  9. cpp
  10. distance-transform
  11. euclidean-distance
  12. euclidean-distance-transform
  13. marching-parabolas
  14. neuroscience
  15. numpy
  16. parallel
  17. python
  18. signed-distance-field
  19. signed-distance-functions
2 Contributors
3.0.0published 2 months agoLGPL-3.0, GPL-3.0+

kimimaro

Skeletonize densely labeled image volumes.
  1. volumetric-data
  2. numpy
  3. teasar
  4. skeletonization
  5. centerline
  6. medial-axis-transform
  7. centerline-extraction
  8. computer-vision-alogithms
  9. connectomics
  10. image-processing
  11. biomedical-image-processing
  12. voxel
  13. computer-vision-algorithms
  14. cross-section
  15. cross-section-area
  16. image-segmentation
  17. python
  18. skeletons
4 Contributors
5.0.0published 2 months agoAGPL-3.0, GPL-3.0+

intern

Python SDK for interacting with neuroscience data via the Boss API.
  1. brain
  2. microscopy
  3. neuroscience
  4. connectome
  5. connectomics
  6. spatial
  7. EM
  8. electron
  9. calcium
  10. database
  11. boss
  12. microns
18 Contributors
1.4.2published 1 week agoApache-2.0
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